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Butternut Squash Mac and Cheese with Caramelized Onions, Bacon, and Apple

I have a thing for butternut squash mac and cheese, mostly because I have a thing for secretly healthy things that don’t seem healthy.

But the butternut squash is just the beginning.  In case you didn’t notice by the longest blog title ever, there is a ton of good stuff in this mac and cheese, because sometimes I just need to add in everything.

And by everything, I mean caramelized onions, fresh crispy sweet apples, and crispy bacon

Are you in love yet?  My stomach is happy and so are my skinny jeans and so is my husband.  This is a delicious miracle!

Now, for the moment of truth. Come on, you can uncover your eyes. This mac n’ cheese is almost guilt-free!

And I guess if you wanted to be a little weird, you could leave out the cheese for an even more guilt free (but still creamy and super delicious) meal!

Butternut squash mac and cheese with caramelized onions, crispy bacon, and fresh sweet apples on a fork.
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A picture of <span class="fn">Butternut Squash Mac n’ Cheese with Bacon, Caramelized Onions, and Apples

Butternut Squash Mac n’ Cheese with Bacon, Caramelized Onions, and Apples


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4.8 from 33 reviews

Description

This healthy butternut squash mac and cheese has caramelized onions, crispy bacon, and fresh sweet apples. It’s my go-to comfort food!


Ingredients

Scale
  • 1/2 box whole grain elbow macaroni (about 2.5 cups dry)
  • 1 cup canned butternut squash puree
  • 1/4 cup + 2 tablespoons evaporated milk
  • 1/4 cup chicken or vegetable broth
  • 1 oz low fat cream cheese
  • 1 teaspoon salt
  • 1/2 cup shredded cheddar cheese
  • 1 tablespoon butter
  • 1/2 cup onions, sliced thinly
  • 1 large crispy apple, chopped or grated
  • 4 tablespoons crumbled bacon


Instructions

  1. Heat butter in a skillet over low heat. When melted, add onions and let caramelize for at least 30 minutes for the best flavor. Keep heat on low/low-medium.
  2. Cook the pasta according to directions. Drain and return to pan over low heat. Add butternut squash, chicken broth, evaporated milk, and cream cheese. When combined, add in salt.
  3. Add onions and apples to the pasta. Stir to combine and add a tablespoon more broth or milk if needed.
  4. Just before serving, mix in cheese and stir until melted. Top each serving with 1 tablespoon bacon.

Notes

Because there’s very little butter, it can “dry out” quickly, especially once off the heat. Add a tablespoon of water, milk, or broth if you need to get it back to its original creaminess.

  • Prep Time: 30 mins
  • Cook Time: 20 mins
  • Category: Dinner
  • Cuisine: American

Keywords: healthy butternut squash mac and cheese, healthy mac and cheese, squash mac and cheese

If this is eating healthy, I like it.

I also like rewarding myself with these cookies afterwards.

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187 Comments

  1. Pinch of Yum Logo

    I made this recipe today for 10 people. I made a few modifications like adding more cream cheese, apples, onions and bacon than the recipe called for. In addition, I added salt, pepper, nutmeg and paprika. I couldn’t find pureed butternut squash, so I roasted the butternut squash in the oven before I pureed it in my blender. I added the apples to the blender and chopped into small pieces.

    The biggest change was baking everything in the oven instead of keeping it on the stove. Once I cooked the macaroni, I mixed it in with all the other ingredients and put everything into the oven. I turned it into a casserole.

    This was met with lots of success. Everyone enjoyed the meal.

  2. Pinch of Yum Logo

    Amazing recipe!! My partner and I gobbled down the food so fast, it was so delicious. I don’t do well with cow’s milk so I substituted it with oat milk. I sauteed the chopped apple prior to sauteeing the onions and then combined them. Will definitely make this again!

  3. Pinch of Yum Logo

    Hi there – this is one of my family’s favorites! Quick question – can I freeze leftovers?

    1. Pinch of Yum Logo

      Hi Ann! We haven’t tried freezing this recipe, but it should work just fine.

  4. Pinch of Yum Logo

    I was super skeptical about this recipe but it turned out great – my friends really loved it! The hardest part was finding the butternut squash puree canned. I doubled the recipe – it heats up very well!

  5. Pinch of Yum Logo

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  6. Pinch of Yum Logo

    Love this recipe and make it at least once or twice a year! I’m planning on doing up a huge batch for my daughter’s birthday party tomorrow. One problem I’ve had when making multiple recipes at once is that it can be difficult to get the mac back up to temp without burning or mushing it, especially when I prepare some components in advance and keep them in the fridge. Thoughts on making it into a baked mac and cheese at the end? Thanks!

  7. Pinch of Yum Logo

    Made this for dinner last night with dilatini pasta (because its such a cute little noodle! – is that weird?) and it was delicious. Took leftovers to work for lunch and reheated in microwave with a little water, which turned out great as well. Yum!!! Even though it is still in the high 70s to low 80s where I am, it is cooling down at night and that has pushed me into full on FALL mode! Thanks for this yummy recipe!

  8. Pinch of Yum Logo

    I made this last night for dinner and it was SO GOOD. I couldn’t find canned squash at my grocery store so I used canned pumpkin, since they’re fairly similar. I also used a mix of gruyere and cheddar since I wanted to finish the gruyere I had open. There was a lot of prep (chopping onions, grating apple, cooking bacon, chopping bacon) but totally worth it for the end product.

    THANK YOU for another amazing recipe!!

  9. Pinch of Yum Logo

    Long-time reader, first time commenter šŸ™‚ This recipe blew my socks off! I also resorted to using baby food (three grocery stores and no canned pureed squash) and it worked out great. Will be making again and again.

  10. Pinch of Yum Logo

    Made this last night and it was delicious! I used the water out of a can of full fat coconut milk instead of evaporated milk. I also added broccoli florets which I cooked with the pasta and omitted the bacon entirely. It was wonderful. My one year old devoured it so it’s definitely kid approved!! Thank you for a great recipe to add to our rotation šŸ™‚

  11. Pinch of Yum Logo

    i’m looking for vegetarian recipes. I just recently turned vegetarian and are looking for recipes to try.

  12. Pinch of Yum Logo

    FINALLY made this after my friend wouldn’t stop raving about it….and she was so right. Wow, this is a whole pot of YUM, thank you so much!

  13. Pinch of Yum Logo

    Do you think butternut squash bisque would work? My blender has blown up and I am waiting till Christmas for a new so I can’t puree my own and my local grocery store doesn’t carry canned puree.

    1. Pinch of Yum Logo

      Sure! But the stuff in this recipe is a little thicker than the soup would be so you just might want to compensate with a less liquid.

  14. Pinch of Yum Logo

    Magnificent site. Lots of helpful information here. I am sending it to several friends
    ans also sharing in delicious. And obviously, thanks for your
    sweat!